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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11439545_11440441_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11439545 - 11440441
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTAAA
5'SS Class:
major
3'SS Sequence:
TTACATTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTATTTTTAAGA
Flanking Amino Acid:
EEVMKMLVELAKSRGVESAR
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
75.9
35.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.9
0.65
0.9
76.9
36.7
Minor 5ss
40.7
-1
2.6
47.7
43.2
Minor BPS
60.2
0.32
1.6
66.93
40.2

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679