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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11440511_11442380_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11440511 - 11442380
Intron Length:
1870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
AATAACTCAAGT
Flanking Amino Acid:
FSGEKINFTENRAVLHIALR
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
77.9
0.63
0.8
76.2
32.4
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
47.1
-0.1
2
66.27
43.5

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679