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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11442501_11443446_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11442501 - 11443446
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
CTTTTCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATAGCATAAAAT
Flanking Amino Acid:
VLDKMKHFCQRVRGGEWKGY
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
79.2
0.66
0.9
73.4
37.1
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
46.3
-0.2
2.1
65.9
44

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679