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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11443531_11443613_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11443531 - 11443613
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAA
U12 Branch Point Sequence:
TAAAACCTAACT
Flanking Amino Acid:
VNIGIGGSDLGPLMVTEALK
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
54.7
0.12
1.2
56.1
37.3
Major PPT
83.4
0.75
0.8
81.3
36.4
Minor 5ss
41.2
-1
2.9
54.6
44.5
Minor BPS
52.8
0.17
1.9
73.55
42

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679