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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11443761_11445492_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11443761 - 11445492
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTTCTGATGT
Flanking Amino Acid:
DTTLFIIASKTFTTQETITN
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.7
0.55
1
68.7
41.2
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
49.5
0.04
2
73.14
43.6

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679