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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11447507_11448470_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11447507 - 11448470
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
GTTGTCTAAACT
Flanking Amino Acid:
DPENMFEFWDWVGGRYSLWS
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
87.1
0.83
0.8
85.3
34.4
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
62.4
0.47
1.8
79.89
42.3

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679