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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11450176_11450418_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11450176 - 11450418
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTAAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTCATTT
Flanking Amino Acid:
ESLLAGAHWMDNHFHTAPLE
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
59.6
0.22
1.2
61.6
42.4
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
52.6
0.16
1.7
73.71
37.9

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679