About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11450572_11450931_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11450572 - 11450931
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
AAAATGATAACT
Flanking Amino Acid:
MHRFAAYFQQGDMESNGKYI
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
68
0.45
1
57.8
39
Major PPT
83.4
0.75
0.7
81.6
23.4
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
44.3
-0.3
2.2
62.19
41.1

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679