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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11451062_11451426_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11451062 - 11451426
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAG
5'SS Class:
major
3'SS Sequence:
ACTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATTAACGTGACT
Flanking Amino Acid:
QHAFYQLIHQGTRMIPCDFL
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
39.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.9
0.74
0.8
77
30.9
Minor 5ss
42.5
-0.8
3
55
49.2
Minor BPS
49.1
0.01
2.2
75.48
40.9

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679