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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11453049_11454576_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11453049 - 11454576
Intron Length:
1528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ACTTCTTTAAAT
Flanking Amino Acid:
VWDINSYDQWGVELGKQLAK
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.7
0.6
1
71.4
37.5
Minor 5ss
38.3
-1.3
3
45.5
42.6
Minor BPS
74.6
0.85
1.3
83.47
37.5

Associated Gene:

Gene:
GPI
Ensembl Gene ID:
ENSAPLG00000010107
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010618
11435022 - 11454700
19679