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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11513690_11516503_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11513690 - 11516503
Intron Length:
2814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CACTCACTAACC
Flanking Amino Acid:
DYHVECYHCEDCGLQLNDEE
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
49.6
-0
2
61.57
43.3

Associated Gene:

Gene:
WTIP
Ensembl Gene ID:
ENSAPLG00000023301
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019649
11513537 - 11588190
74654