Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11516573_11518490_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11516573 - 11518490

Intron Length:

1918

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCCCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

CTTTCCCCAACA

Flanking Amino Acid:

SCNQPILPAQGSEETIRVVS

Intron Amino Acid Position:

635

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

85.4

31.7

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

75.4

0.57

0.8

70.4

29.1

Minor 5ss

37.6

-1.4

3.6

57.9

46.7

Minor BPS

61.3

0.35

1.9

76.63

40.3

Associated Gene:

Gene:

WTIP

Ensembl Gene ID:

ENSAPLG00000023301

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019649

11513537 - 11588190

74654