About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11519622_11522009_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11519622 - 11522009
Intron Length:
2388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
ATCCACTTATTT
Flanking Amino Acid:
FVCGHLIMEMILQALGKSYH
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
67.8
37.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
72.9
0.52
1
76.3
32.7
Minor 5ss
29.9
-2.3
3.3
35.1
42.4
Minor BPS
50.8
0.1
1.8
68.84
42.1

Associated Gene:

Gene:
WTIP
Ensembl Gene ID:
ENSAPLG00000023301
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019649
11513537 - 11588190
74654