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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11522073_11534703_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11522073 - 11534703
Intron Length:
12631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
GTCATTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTCATTTTAACA
Flanking Amino Acid:
GKVYCEEDFLYSGFQQTADK
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.4
37.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.7
0.53
1
69
40.7
Minor 5ss
36.9
-1.5
2.7
44.1
38.5
Minor BPS
64.8
0.46
1.3
68.05
38.5

Associated Gene:

Gene:
WTIP
Ensembl Gene ID:
ENSAPLG00000023301
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019649
11513537 - 11588190
74654