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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11534772_11562290_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11534772 - 11562290
Intron Length:
27519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ACTGTTTTAACA
Flanking Amino Acid:
HTNCFTCCSCGRRLRGKAFY
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.3
0.55
1
69.5
40
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
65
0.47
1.4
68.42
38.7

Associated Gene:

Gene:
WTIP
Ensembl Gene ID:
ENSAPLG00000023301
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019649
11513537 - 11588190
74654