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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11562393_11586704_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11562393 - 11586704
Intron Length:
24312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AGAATTCTAACA
Flanking Amino Acid:
LEMHMKKEYFGICIKCGKGV
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.2
33
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
88
0.85
0.6
84.7
23
Minor 5ss
28
-2.5
3.1
35.2
41.4
Minor BPS
48.2
-0.1
1.6
56.75
35.7

Associated Gene:

Gene:
WTIP
Ensembl Gene ID:
ENSAPLG00000023301
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019649
11513537 - 11588190
74654