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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11597804_11598782_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11597804 - 11598782
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTATTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTGGAATTAAAA
Flanking Amino Acid:
DDGAQPSTSTAPDQDDLLII
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
79.8
0.67
0.9
73.7
40.9
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
48.1
-0.1
2
62.96
42.7

Associated Gene:

Gene:
UBA2
Ensembl Gene ID:
ENSAPLG00000011122
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011636
11597625 - 11609759
12135