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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11598920_11599651_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11598920 - 11599651
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTGTTTATAAAG
Flanking Amino Acid:
DYTLLINVLHSEDLEKDVEF
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
91.6
26.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.2
0.75
0.8
77.6
36.4
Minor 5ss
38.2
-1.3
3.4
56.9
47.4
Minor BPS
51.1
-0.1
1.8
60.84
41.2

Associated Gene:

Gene:
UBA2
Ensembl Gene ID:
ENSAPLG00000011122
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011636
11597625 - 11609759
12135