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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11599964_11600550_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11599964 - 11600550
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTCGTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GATTAAGTAATC
Flanking Amino Acid:
KVTVLTLQDKIVKEKFAMVA
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
83.9
0.76
0.8
81
31
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
44.5
-0.4
2.3
58.79
39.7

Associated Gene:

Gene:
UBA2
Ensembl Gene ID:
ENSAPLG00000011122
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011636
11597625 - 11609759
12135