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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11603197_11604070_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11603197 - 11604070
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TAATGTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTGTAATG
Flanking Amino Acid:
GYDPVKLFTKLFKDDIRYLL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
80.5
35
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
0.9
74
41.1
Minor 5ss
77.1
0.91
1.7
84.6
33.2
Minor BPS
58.2
0.12
2
69.97
38.4

Associated Gene:

Gene:
UBA2
Ensembl Gene ID:
ENSAPLG00000011122
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011636
11597625 - 11609759
12135