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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11607622_11608098_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11607622 - 11608098
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGTTT
5'SS Class:
major
3'SS Sequence:
TCTTGCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTCTTTAAAA
Flanking Amino Acid:
TLVMNALDNRAARNHVNRMC
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
78
32.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86
0.81
0.8
80.4
31.6
Minor 5ss
36.6
-1.5
3.6
55
49.2
Minor BPS
82.7
1.02
1.1
88.66
27.6

Associated Gene:

Gene:
UBA2
Ensembl Gene ID:
ENSAPLG00000011122
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011636
11597625 - 11609759
12135