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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11608164_11609354_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11608164 - 11609354
Intron Length:
1191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTTG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ACAACTTTGATA
Flanking Amino Acid:
MNPDYNVEFFR
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
74.2
37
Major BPS
84
0.85
0.9
75
39.9
Major PPT
87.8
0.85
0.6
84.9
22.8
Minor 5ss
55.7
0.19
2.3
66.6
38.8
Minor BPS
54.9
0.15
1.2
57.36
36.1

Associated Gene:

Gene:
UBA2
Ensembl Gene ID:
ENSAPLG00000011122
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011636
11597625 - 11609759
12135