Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11609426_11609675_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

11609426 - 11609675

Intron Length:

250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

GAAATAATAAGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

29.3

Major BPS

71.2

0.53

70.3

31.9

Major PPT

87.7

0.85

0.7

81.2

36.5

Minor 5ss

26.1

-2.7

2.9

29.9

43.2

Minor BPS

40.6

-0.6

53.92

40.4

Associated Gene:

Gene:

UBA2

Ensembl Gene ID:

ENSAPLG00000011122

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011636

11597625 - 11609759

12135