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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11614560_11615111_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11614560 - 11615111
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATTGGC
5'SS Class:
major
3'SS Sequence:
GTTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CATCCCTTTATT
Flanking Amino Acid:
ALVSMLQSDSDLSVEFGTVI
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
64.5
40
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
29.5
-2.4
2.9
36.6
40.3
Minor BPS
61.7
0.45
1.7
74.46
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011770
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012252
11614429 - 11619677
5249