About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11615261_11615404_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11615261 - 11615404
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGACC
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
GATACAAAAAAT
Flanking Amino Acid:
SERSLLLRLSRYSWGGQPLF
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
65
38.8
Major BPS
79.2
0.72
1
75
40
Major PPT
78.6
0.64
0.9
83.4
25.5
Minor 5ss
39.7
-1.2
3
52.9
44
Minor BPS
40.7
-0.6
2.1
58.98
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011770
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012252
11614429 - 11619677
5249