Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11627982_11628293_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11627982 - 11628293

Intron Length:

312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

TATTTCTTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

GAGCATTTAAAC

Flanking Amino Acid:

QYRLGIAGYFSTGDKHARGN

Intron Amino Acid Position:

185

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

86.8

22.9

Major BPS

81.6

0.78

0.8

24.9

Major PPT

84.9

0.78

0.7

77.9

36.1

Minor 5ss

39.6

-1.2

3.1

55.7

48.5

Minor BPS

47.9

-0.1

1.6

52.47

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011908

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018944

11622133 - 11631043

8911

ENSAPLT00000012466

11622133 - 11631043

8911