Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11630144_11630910_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11630144 - 11630910

Intron Length:

767

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCCTC

5'SS Class:

strong_major

3'SS Sequence:

ACACATCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACACAT

U12 Branch Point Sequence:

ATTATCTGAATT

Flanking Amino Acid:

TAGITALVATGQKAEQPEVV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

68.8

42.2

Major BPS

69.9

0.49

75.2

29.8

Major PPT

61.6

0.26

0.9

38.1

Minor 5ss

42.6

-0.8

3.1

56.9

41.9

Minor BPS

65.2

0.55

1.4

79.88

35.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011908

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018944

11622133 - 11631043

8911

ENSAPLT00000012466

11622133 - 11631043

8911