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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11635808_11635971_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11635808 - 11635971
Intron Length:
164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAATG
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTGTTGTTTACA
Flanking Amino Acid:
MKYWANFARNGDPNGEGLVE
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
71.5
40.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
31.2
-2.1
3
32.3
42
Minor BPS
50.3
0
2.3
70.34
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028614
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036514
11635618 - 11641625
6008