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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11636045_11637797_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11636045 - 11637797
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATATAG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CCTCCTATAATA
Flanking Amino Acid:
GFVFGGPYLAGEATEEEKNL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
66.6
35.1
Major BPS
80
0.75
1
78.6
31
Major PPT
89.1
0.88
0.7
88.2
29.1
Minor 5ss
31.9
-2.1
3
38.1
46.8
Minor BPS
52.5
0.07
1.6
61.11
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028614
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036514
11635618 - 11641625
6008