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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11637930_11638606_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11637930 - 11638606
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTAG
5'SS Class:
major
3'SS Sequence:
TTACATATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCTCCTCTAATT
Flanking Amino Acid:
PSIKALNYHKETGAPTYFFE
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
61.9
41.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.8
0.49
0.9
63.3
42.3
Minor 5ss
37.3
-1.4
3
38.1
46.8
Minor BPS
61.2
0.43
1.7
77.83
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028614
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036514
11635618 - 11641625
6008