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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11643690_11643952_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11643690 - 11643952
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTACGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATGTCTTACCC
Flanking Amino Acid:
AGSDKKDKLPVMVWIHGGNF
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
67.7
39.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
77.2
0.61
1
79.4
26.5
Minor 5ss
36.9
-1.5
3
51.4
45.2
Minor BPS
60.7
0.31
1.7
70.71
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023248
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043055
11643552 - 11648674
5123