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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11647433_11647557_F

Intron Information:

Intron Rank:
1
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
11647433 - 11647557
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
TCG|ATATCCTGA
5'SS Class:
minor
3'SS Sequence:
CTTAACCTGACAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTTTCCTTAACC
Flanking Amino Acid:
PDSIDDREIFDLIRSINDPE
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
33.5
-1
3.4
40.7
42.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
39.1
-0.6
3.2
53.7
41.2
Minor 5ss
74.4
0.81
1.7
77.6
37.4
Minor BPS
90
1.24
0.9
90.55
30.7

Associated Gene:

Gene:
CIAO2B
Ensembl Gene ID:
ENSAPLG00000026091
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047147
11647297 - 11648003
707