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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11666265_11666792_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11666265 - 11666792
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCAGGTACG
5'SS Class:
major
3'SS Sequence:
TTTAGGATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTTTCTCACTC
Flanking Amino Acid:
EASLVVFDIWDQWLQNHCMK
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.3
65.8
39.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
64.1
0.32
1.2
58.1
46.2
Minor 5ss
25.6
-2.8
3.8
30.4
36.3
Minor BPS
52.9
0.07
1.8
66.75
39.3

Associated Gene:

Gene:
RRAD
Ensembl Gene ID:
ENSAPLG00000012711
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013223
11660727 - 11668601
7875