About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11775396_11777831_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11775396 - 11777831
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTACCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTACTCTTATTT
Flanking Amino Acid:
VEFEDTDDKTVISGGPFENP
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
71.7
0.49
0.8
65.7
35.1
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
62.4
0.47
1.6
77.9
38.6

Associated Gene:

Gene:
CA7
Ensembl Gene ID:
ENSAPLG00000012712
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013252
11771855 - 11779963
8109