About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11783762_11784800_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11783762 - 11784800
Intron Length:
1039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGCCG
5'SS Class:
major
3'SS Sequence:
TATCCCAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTCTGTTTATAT
Flanking Amino Acid:
LKEQRYDRQLRLWGDHGQEA
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.3
48.8
47.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
65.9
0.36
0.9
59.6
35.5
Minor 5ss
35.2
-1.7
3.5
47.9
47.8
Minor BPS
49.2
0.02
2.1
72.46
44.8

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866