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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11784905_11784997_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11784905 - 11784997
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTCCTTCAAG
Flanking Amino Acid:
TEILKNLVLPGIGSFTIVDG
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.4
1.09
0.7
87
30
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
81.2
0.7
1
80.1
32.4
Minor 5ss
35.1
-1.7
2.7
41.5
45.1
Minor BPS
66.9
0.39
2
76.73
40.6

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866