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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11785059_11785999_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11785059 - 11785999
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTTTG
5'SS Class:
major
3'SS Sequence:
GTCTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTTCTTGTCT
Flanking Amino Acid:
NRVSGEDVGNNFFLQKSHIG
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
83.5
0.75
0.8
80.5
31.5
Minor 5ss
44.1
-0.6
3.1
57.5
41.6
Minor BPS
48.3
-0
3.5
82.23
39.8

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866