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Intron Name: Anas_platyrhynchos_platyrhynchos_12_11788306_11788634_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11788306 - 11788634

Intron Length:

329

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

ACTTCTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATGCAT

U12 Branch Point Sequence:

CATCGTGTAACT

Flanking Amino Acid:

YMRVIIKEHPVVESHPDNAL

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

1.1

80.1

32.8

Major BPS

58.4

0.21

1.3

69.4

37.7

Major PPT

0.81

0.7

80.6

30.6

Minor 5ss

32.7

-2

3.4

47.9

47.7

Minor BPS

45.6

-0.2

2.3

65.93

44.9

Associated Gene:

Gene:

NAE1

Ensembl Gene ID:

ENSAPLG00000013192

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013807

11783583 - 11797448

13866