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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11789360_11789604_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11789360 - 11789604
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTAAATT
Flanking Amino Acid:
AKYLTKWFNEKSDQLPKSYK
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.9
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.3
0.61
0.9
76.3
37
Minor 5ss
46.6
-0.3
2.5
61.6
43.3
Minor BPS
63.7
0.51
1.6
79.54
37.3

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866