About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11792121_11792205_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11792121 - 11792205
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATATACATAACT
Flanking Amino Acid:
DDCCTNLTEQSPSFWVLVRA
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.3
40.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.6
0.76
0.8
77.6
35.6
Minor 5ss
34.1
-1.8
3.2
49.3
46.5
Minor BPS
63
0.49
1.8
82.04
38.3

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866