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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11792340_11793329_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11792340 - 11793329
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTATTATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTATTGACA
Flanking Amino Acid:
DSNKFIRLQNVYREKAKKDI
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.6
0.6
1
73.2
41
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
65.1
0.47
1.6
76.03
34.4

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866