About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11793815_11794844_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11793815 - 11794844
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TGCATTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
TCTTTCTGCATT
Flanking Amino Acid:
SISERELKLLCSNSAFLRVV
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
74.2
0.55
0.8
72.8
37.3
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
54.3
0.22
1.9
75.82
41.6

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866