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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11796564_11796634_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11796564 - 11796634
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTGCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TAACTATTACTT
Flanking Amino Acid:
VVVKDDYVHEFCRYGAAEPH
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
73.1
0.52
0.9
65.7
41
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
47.4
-0.1
1.8
64.43
39.8

Associated Gene:

Gene:
NAE1
Ensembl Gene ID:
ENSAPLG00000013192
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013807
11783583 - 11797448
13866