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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11802602_11803105_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11802602 - 11803105
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GTCTTCTGAGTC
Flanking Amino Acid:
YVILVLVSNNKYGQTYVRET
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
86.1
0.81
0.6
85.1
22.4
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
49.4
-0
1.7
59.42
40

Associated Gene:

Gene:
TERB1
Ensembl Gene ID:
ENSAPLG00000013612
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014187
11801598 - 11805325
3728