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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11819146_11819851_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11819146 - 11819851
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
GCTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
GTCAGCATAACG
Flanking Amino Acid:
PSEEEEGQNLWSSILSEVST
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.5
40.7
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
80.2
0.68
0.8
72.8
37.5
Minor 5ss
33.8
-1.8
3
40.2
39.7
Minor BPS
46.3
-0.4
2.1
53.9
46.4

Associated Gene:

Gene:
DYNC1LI2
Ensembl Gene ID:
ENSAPLG00000013844
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014478
11819051 - 11886379
67329