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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11832606_11832950_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11832606 - 11832950
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTCTTTATCC
Flanking Amino Acid:
GIPVLVVCTKCDAVSVLEKE
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
80
0.75
1
78.6
31
Major PPT
88
0.85
0.7
80.3
31.8
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
77.1
0.83
1.5
86.09
32

Associated Gene:

Gene:
DYNC1LI2
Ensembl Gene ID:
ENSAPLG00000013844
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014478
11819051 - 11886379
67329