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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11833722_11834437_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11833722 - 11834437
Intron Length:
716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAA
U12 Branch Point Sequence:
TTTCCTTCAATT
Flanking Amino Acid:
ALVVEKDAVFIPAGWDNEKK
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.6
37
Major BPS
65.8
0.39
1.1
69.2
36.3
Major PPT
85.2
0.79
0.7
81.3
29.9
Minor 5ss
36.9
-1.5
2.9
47.3
41.1
Minor BPS
69.6
0.69
1.5
85.73
34.4

Associated Gene:

Gene:
DYNC1LI2
Ensembl Gene ID:
ENSAPLG00000013844
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014478
11819051 - 11886379
67329