About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11876684_11885171_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11876684 - 11885171
Intron Length:
8488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTATCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTATTTTATCT
Flanking Amino Acid:
RIPQINWNLTDLVNTGLSTL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.8
0.7
85.2
29.2
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
61.3
0.43
1.6
78.44
38

Associated Gene:

Gene:
DYNC1LI2
Ensembl Gene ID:
ENSAPLG00000013844
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014478
11819051 - 11886379
67329