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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11885271_11886205_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11885271 - 11886205
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTACCTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTGTCTTTGACG
Flanking Amino Acid:
HKTGAEIAAVIFGFLAMAVY
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
74.9
0.56
0.8
69.5
30.8
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
74.3
0.62
1.3
74.14
38.7

Associated Gene:

Gene:
DYNC1LI2
Ensembl Gene ID:
ENSAPLG00000013844
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014478
11819051 - 11886379
67329