Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_11902003_11903752_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11902003 - 11903752

Intron Length:

1750

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTGAA

5'SS Class:

major

3'SS Sequence:

GTTTATTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAC

U12 Branch Point Sequence:

GTTTATTTTACA

Flanking Amino Acid:

KFKGLYWPLTDFLRCVTAAV

Intron Amino Acid Position:

138

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

71.7

33.7

Major BPS

72.6

0.56

0.9

63.1

35.8

Major PPT

86.2

0.82

0.8

80.1

37.1

Minor 5ss

34.2

-1.8

3.2

45.6

43.6

Minor BPS

59.2

0.28

1.8

73.14

38.1

Associated Gene:

Gene:

CMTM3

Ensembl Gene ID:

ENSAPLG00000014361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014973

11899320 - 11912997

13678